NIH-funded research R01 grant

Gut bacteria and cancer drugs: how your gut may change 5-FU treatment

Official title: Metabolism of cancer chemotherapeutics by the human gut microbiome

Funded at University of California, San Francisco · NIH-11397471 · Data updated 2026-11-12

A research team at UC San Francisco studies how the gut microbiome affects how people respond to cancer drugs like 5-FU and capecitabine, aiming to explain differences in effectiveness and side effects.

More Gut Microbiome research and trials

Quick facts

Grant typeR01 grant
Study typeNIH-funded research
Funding institutionUniversity of California, San Francisco
NIH-funded
Lab location1 site (San Francisco, United States)
Project startSeptember 1, 2023
Project endAugust 31, 2028
Funding year2026
Award (this year)$552,282
NIH project number5R01CA255116-04
Project IDNIH-11397471 on NIH RePORTER

Who could benefit from this research

Could help

Ideal candidates are adults with colorectal cancer or those treated with 5-FU/CAP who are open to future microbiome-informed approaches and trials.

Less likely to help

Patients not receiving fluoropyrimidine chemotherapy or without access to gut microbiome insight may not directly benefit.

What this research studies

This project uses lab experiments and mouse models to uncover which gut bacteria and their genes change the way fluoropyrimidines are processed in the body. By identifying specific bacteria that inactivate or modify 5-FU and CAP, the team hopes to map how gut microbes influence drug levels and outcomes. The goal is to generate data that could guide better dosing or personalized approaches for colorectal cancer patients in the future. This work builds on existing findings and moves from in vitro studies to preclinical mouse models to understand mechanisms in a living system.

Why it matters

Potential benefit: If successful, the findings could lead to more predictable drug responses and fewer side effects for cancer patients through microbiome-informed strategies.

How similar studies have gone: Previous studies show that gut bacteria can affect drug metabolism; this project extends those observations to specific bacteria and enzymes in preclinical models.

Where this research is happening

  • University of California, San Francisco
    San Francisco, United States
    Active

Researchers

  • Principal investigator: Turnbaugh, Peter James — University of California, San Francisco
  • Study coordinator: Turnbaugh, Peter James

Related research

Other NIH-funded projects on the same topics.

  • Multi-agent AI to annotate enzymes in the human gut microbiome

    A team at a major university will build an AI system that automatically curates and labels the functions of enzymes in the human gut microbiome to speed up understanding their health effects.

    NIH research University of South Florida · Tampa, United States · NIH-11594384

  • Mapping how gut bacteria transform drugs

    Scientists will study how the gut microbiome changes thousands of drugs into new forms, which could affect how well a medicine works or whether it causes side effects.

    NIH research Stanford University · Stanford, United States · NIH-11550022

  • Aflatoxin exposure and child growth in Guatemala

    A study in rural Guatemala will track how exposure to aflatoxin relates to growth and gut health in young children.

    NIH research Arizona State University-Tempe Campus · Scottsdale, United States · NIH-11513260

  • Gut bacteria that can make cancer immunotherapy less effective

    This project will see if reducing chronic inflammation driven by certain gut bacteria can help immunotherapy work better for people whose cancers have stopped responding.

    NIH research University of Tx Md Anderson Can Ctr · Houston, United States · NIH-11478145

  • How gut bacteria affect how cancer drugs work

    This project looks at how the bacteria in your gut might change how well and with what side effects fluoropyrimidine cancer drugs like 5-FU work in people.

    NIH research University of California, San Francisco · San Francisco, United States · NIH-11473234

  • Gut bacteria and cancer drugs: how your gut may change chemotherapy effectiveness

    This project studies how the gut microbiome might affect how well certain chemotherapy drugs work and their side effects in people with cancer.

    NIH research University of California, San Francisco · San Francisco, United States · NIH-11473233

About this research

  1. This is an active NIH-funded research project — typically early-stage science, not a clinical trial accepting patient enrollment.
  2. Some NIH-funded labs run parallel clinical studies or seek volunteers for related work. To check, contact the principal investigator or institution listed above.
  3. For full project details, budget, and progress reports, visit the official NIH RePORTER page.
Last reviewed 2026-11-14 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.