NIH-funded research R01 grant

Gut bacteria and cancer drugs: how your gut may change chemotherapy effectiveness

Official title: Metabolism of cancer chemotherapeutics by the human gut microbiome

Funded at University of California, San Francisco · NIH-11473233 · Data updated 2026-11-12

This project studies how the gut microbiome might affect how well certain chemotherapy drugs work and their side effects in people with cancer.

More Gut Microbiome research and trials

Quick facts

Grant typeR01 grant
Study typeNIH-funded research
Funding institutionUniversity of California, San Francisco
NIH-funded
Lab location1 site (San Francisco, United States)
Project startSeptember 1, 2023
Project endAugust 31, 2028
Funding year2026
Award (this year)$135,331
NIH project number3R01CA255116-04S1
Project IDNIH-11473233 on NIH RePORTER

Who could benefit from this research

Could help

Patients with cancer who are treated with fluoropyrimidines (like 5-FU or capecitabine) could potentially benefit from insights that tailor therapy.

Less likely to help

Patients not receiving fluoropyrimidines or whose cancer type diverges from the studied models may not benefit directly.

What this research studies

Researchers will study how gut bacteria influence the metabolism of fluoropyrimidine chemotherapy drugs like 5-FU and capecitabine using test-tube experiments and mouse models. The goal is to identify specific gut bacteria, genes, and enzymes that alter drug levels and effects, which could explain why patients respond differently. Findings could lead to better dosing strategies or supportive therapies to improve efficacy and reduce toxicity for cancer patients. The work will use in vitro assays, gnotobiotic mice, and xenograft models to connect microbial metabolism with drug PK/PD.

Why it matters

Potential benefit: If successful, the research could pave the way for personalized chemotherapy plans that consider a patient’s gut microbiome to optimize effectiveness and minimize side effects.

How similar studies have gone: Prior studies show microbiome can affect drug metabolism; this project builds on that by linking specific bacteria and enzymes to 5-FU and CAP metabolism.

Where this research is happening

  • University of California, San Francisco
    San Francisco, United States
    Active

Researchers

  • Principal investigator: Turnbaugh, Peter James — University of California, San Francisco
  • Study coordinator: Turnbaugh, Peter James

Related research

Other NIH-funded projects on the same topics.

  • Multi-agent AI to annotate enzymes in the human gut microbiome

    A team at a major university will build an AI system that automatically curates and labels the functions of enzymes in the human gut microbiome to speed up understanding their health effects.

    NIH research University of South Florida · Tampa, United States · NIH-11594384

  • Mapping how gut bacteria transform drugs

    Scientists will study how the gut microbiome changes thousands of drugs into new forms, which could affect how well a medicine works or whether it causes side effects.

    NIH research Stanford University · Stanford, United States · NIH-11550022

  • Aflatoxin exposure and child growth in Guatemala

    A study in rural Guatemala will track how exposure to aflatoxin relates to growth and gut health in young children.

    NIH research Arizona State University-Tempe Campus · Scottsdale, United States · NIH-11513260

  • Gut bacteria that can make cancer immunotherapy less effective

    This project will see if reducing chronic inflammation driven by certain gut bacteria can help immunotherapy work better for people whose cancers have stopped responding.

    NIH research University of Tx Md Anderson Can Ctr · Houston, United States · NIH-11478145

  • How gut bacteria affect how cancer drugs work

    This project looks at how the bacteria in your gut might change how well and with what side effects fluoropyrimidine cancer drugs like 5-FU work in people.

    NIH research University of California, San Francisco · San Francisco, United States · NIH-11473234

  • Long-term study of NAFLD progression and gut bacteria in diverse groups

    We’re following people over time to see how the gut microbiome and diet relate to fatty liver disease progression in diverse racial/ethnic groups.

    NIH research University of Hawaii at Manoa · Honolulu, United States · NIH-11453729

About this research

  1. This is an active NIH-funded research project — typically early-stage science, not a clinical trial accepting patient enrollment.
  2. Some NIH-funded labs run parallel clinical studies or seek volunteers for related work. To check, contact the principal investigator or institution listed above.
  3. For full project details, budget, and progress reports, visit the official NIH RePORTER page.
Last reviewed 2026-11-14 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.