Clinical trial Recruiting at 1 site Phase1; Phase2 Interventional Ages 0 Days to 50

Vaginal microbiome exposure for newborns delivered by C-section

Official title: Vaginal Microbiome Seeding and Health Outcomes in Cesarean-delivered Neonates: a Randomized Controlled Trial

Run by National Institute of Allergy and Infectious Diseases (NIAID) · NCT03298334 · Data updated 2026-11-12

This study is testing if exposing newborns delivered by C-section to their mother’s vaginal bacteria can improve their health and development over the first three years of life.

Quick facts

PhasePhase1; Phase2
Study typeInterventional
Ages0 Days to 50 Years
SexAll
Enrollment600 (estimated)
SponsorNational Institute of Allergy and Infectious Diseases (NIAID)
NIH
Locations1 site (Falls Church, Virginia)
StatusRecruiting
StartedJuly 1, 2018
Main results expectedApril 2027
Study endsApril 2029
Registry record updatedJune 8, 2025
Trial IDNCT03298334 on ClinicalTrials.gov

Is this trial a fit for you?

Likely a good fit

Ideal candidates include mothers scheduled for Cesarean delivery at 37 weeks or later, in good health, and with a Lactobacillus-dominated vaginal microbiota.

Probably not a fit

Patients who may not benefit include those with complications during pregnancy or those who do not meet the strict eligibility criteria for maternal health and microbiota status.

A plain-English reading of the study's rules. Only the study team can confirm whether you qualify.

What this trial studies

This clinical trial investigates the effects of vaginal microbiome seeding on health outcomes in newborns delivered via scheduled Cesarean section. Infants will be randomly assigned to receive either exposure to their mother's vaginal flora or a sham treatment at birth. The study aims to assess the impact of this intervention on the development of the gut microbiome, immune function, and metabolic outcomes over a three-year period. The trial is divided into two phases, with the first phase focusing on microbiota composition and the second phase evaluating body mass index and immune-mediated outcomes in a larger cohort.

Why it matters

Potential benefit: If successful, this approach could reduce the risk of obesity and immune disorders in Cesarean-delivered infants by restoring beneficial maternal microbes.

How similar studies have gone: Previous pilot studies have shown promising results in normalizing microbiota through vaginal seeding, suggesting potential for success in this larger trial.

Who can join: the full rules

Show full inclusion / exclusion criteria
Inclusion Criteria for Mother:

* Scheduled for cesarean delivery at ≥ 37 weeks
* Pregnant with single fetus, in good general health, age 18 years or older
* Negative maternal testing for infections transmitted through vaginal and/or other body fluids performed as standard of care tests in early pregnancy
* Negative testing for Group B strep at 35-37 weeks gestation
* Vaginal pH ≤ 4.5 indicative of Lactobacillus-dominated vaginal microbiota
* No maternal or fetal complications that may inhibit the ability to perform microbiome restoration per protocol
* English or Spanish speaking
* Negative maternal testing for Gonorrhea, Chlamydia, Hepatitis B, Hepatitis C, Syphilis, and HIV at 35 weeks gestation or later
* Women aged 18-29 years must have a normal Pap test within 3 years
* Women aged 30-65 years must have a normal Pap test and an HPV test (co-testing) within 5 years or FDA-approved primary hrHPV testing alone within 5 years or a normal Pap test alone within 3 years
* Negative maternal testing for SARS-CoV-2 for the delivery admission performed as standard of care test at the Inova Health System.

Inclusion Criteria for Infant:

* Infant condition after delivery requires no more than standard neonatal resuscitation\* or is otherwise medically unable to receive the full VMT procedure

\[\*\] Standard neonatal resuscitation may include: tactile stimulation, bulb suction, oxygen without positive pressure, or drying

Exclusion Criteria for Mother:

* Delivery at a hospital other than Inova Health System
* Cesarean delivery scheduled for active infection that would have interfered with vaginal delivery such as genital herpetic lesions
* Rupture of membranes prior to scheduled cesarean delivery
* Bacterial vaginosis within 30 days of cesarean delivery
* Symptomatic urinary tract infection within 30 days of cesarean delivery
* Antibiotic therapy within 30 days of cesarean delivery (exclusive of medication use for prophylaxis at the time of surgery)
* Symptoms on admission suggesting Chorioamnionitis, e.g. maternal fever, fundal tenderness
* Symptoms on delivery admission of possible vaginal infection such as genital herpetic lesions
* History of genital HSV
* History positive testing for Group B strep infection
* History of a child with a diagnosis of Group B strep sepsis
* Pregnancy a result of donor egg or surrogacy
* Preexisting history of Type I or Type II Diabetes
* Maternal history of documented genital HPV infection, positive HPV testing or genital warts on physician examination
* Positive maternal testing for SARS-CoV-2 within 30 days of delivery or symptoms on admission suggesting potential Covid-19 infection

Where it's running

  • Inova Health System
    Falls Church, Virginia, United States
    Recruiting

Study contacts

  • Principal investigator: Suchitra Hourigan, MD, Chief, Clinical Microbiome Unit, NIAID, Pediatric Gastroenterologist — National Institute of Allergy and Infectious Diseases (NIAID), Inova Children's Hospital
  • Study coordinator: Suchitra Hourigan, MD
  • Email: suchitra.hourigan@inova.org, suchitra.hourigan@nih.gov
  • Phone: 703-776-8489

Similar studies

Other studies for the same condition or treatment. Recruiting studies are listed first.

  • Inulin Prebiotic for Perimenopausal Women with Overweight or Obesity

    This study tests whether 2 weeks of inulin can affect gut and vaginal microbes, heart health, and muscle health in perimenopausal women who are overweight or obese, using a crossover design.

    Recruiting George Washington University · Washington D.C., District of Columbia · NCT07724522

  • Restore a newborn's gut microbiota using the mother's microbes.

    This will test whether giving C-section newborns bacteria from their own mother or commercial probiotics helps their gut microbiota become more like babies born vaginally.

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    Recruiting Stanford University · Stanford, California · NCT07839832

  • Gut microbes and blood signals in sepsis-related liver and kidney injury

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  • Preoperative Fasting to Shape the Gut with Hip Replacement

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How to take part

  1. Review the eligibility criteria above with your treating physician.
  2. Check the official listing on ClinicalTrials.gov for the latest contact details and recruitment status.
  3. Contact the study coordinator or principal investigator to ask for pre-screening. Pre-screening is free and never obligates you to enroll.
Last reviewed 2026-11-14 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.