Oral freeze-dried donor stool capsules to clear antibiotic-resistant gut bacteria.

A Monocentric, Prospective, Randomized, Placebo-controlled, Double-blinded Trial Investigating the Safety and Efficacy of Lyophilized Fecal Microbiota Transplantation Capsules in Decolonization of Patients With Intestinal Carriage of Multidrug-resistant Organisms

Phase1; Phase2 Interventional University of Rijeka · NCT07106580

This will see if taking oral capsules of freeze-dried healthy donor stool can safely clear multidrug-resistant bacteria from the gut of adults who are colonized.

Quick facts

PhasePhase1; Phase2
Study typeInterventional
Enrollment48 (estimated)
Ages18 Years and up
SexAll
SponsorUniversity of Rijeka Academic / other
Locations1 site (Rijeka)
Trial IDNCT07106580 on ClinicalTrials.gov

What this trial studies

This randomized, double-blind, placebo-controlled Phase 1/2 trial gives adults with rectal swab–confirmed intestinal colonization by multidrug-resistant organisms either oral capsules of lyophilized fecal microbiota from healthy donors or matching placebo. Participants swallow the assigned capsules and return for four follow-up visits over six months for stool and rectal swab sampling and safety monitoring. The study's main outcomes are reduction or elimination of MDRO colonization in the gut and the type and frequency of adverse events. Microbiological testing of collected samples will be used to determine decolonization over time.

Who should consider this trial

Good fit: Adults (≥18) with a recent rectal swab positive for MDRO who can swallow capsules, are not pregnant, and meet safety criteria such as adequate blood counts are ideal candidates.

Not a fit: People currently on antibiotics, pregnant or breastfeeding women, those with recent colectomy, active inflammatory or malignant bowel disease, or very low neutrophil counts are unlikely to qualify or receive benefit.

Why it matters

Potential benefit: If successful, this approach could lower gut carriage of MDROs and reduce the risk of subsequent infections and onward transmission.

How similar studies have performed: Small case series and cohort studies have suggested FMT can decolonize MDROs, but high-quality randomized placebo-controlled evidence is limited.

Eligibility criteria

Show full inclusion / exclusion criteria
Inclusion Criteria:

* ≥ 18 years,
* rectal swab positive for MDRO (including but not limited to: CRE, ESBL-E, VRE) within a week of randomization,
* capable of swallowing oral capsules,
* willing to give informed consent

Exclusion Criteria:

* antibiotic treatment on the day of inclusion,
* pregnant or breastfeeding, women of childbearing potential who are unwilling or unable to use an acceptable method of birth control,
* patients with terminal diseases with expected life expectancy \< 6 months,
* unwillingness to ingest the capsules,
* a history of colectomy, present colostomy or ileostomy,
* patients with the diagnosis/treatment of inflammatory or functional bowel disease,
* patients with malignant bowel diseases,
* absolute neutrophil count \< 500/mm3,
* selective digestive decolonization with antibiotics within 6 months before randomization,
* severe allergy to capsule components

Where this trial is running

Rijeka

Study contacts

How to participate

  1. Review the eligibility criteria above with your treating physician.
  2. Visit the official trial page on ClinicalTrials.gov for the most current contact information and recruitment status.
  3. Contact the listed study coordinator or principal investigator to request pre-screening. Pre-screening is free and never obligates you to enroll.
Conditions Colonization, AsymptomaticFMTFecal microbiota transplantationColonizationMDROMultidrug-resistant bacteriaLyophilization
Last reviewed 2026-06-13 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.