Microbiota transplant therapy for Crohn's disease

Standardized Microbiota Transplant Therapy in Crohn's Disease

Phase 2 Interventional University of Minnesota · NCT06631586

This study is testing two types of microbiota transplants to see if they can help people with Crohn's disease feel better and improve their gut health.

Quick facts

PhasePhase 2
Study typeInterventional
Enrollment120 (estimated)
Ages18 Years to 89 Years
SexAll
SponsorUniversity of Minnesota Academic / other
Drugs / interventionschimeric antigen receptor, radiation, Prednisone
Locations2 sites (Minneapolis, Minnesota and 1 other locations)
Trial IDNCT06631586 on ClinicalTrials.gov

What this trial studies

This study evaluates the effectiveness of two forms of encapsulated fecal microbiota transplantation (MTP101C and MTP101S) in patients with Crohn's disease. It aims to determine how well these therapies can engraft in the ileum and colon, and how the phenotype of Crohn's disease affects this engraftment. Additionally, the study will assess changes in symptoms and endoscopic findings before and after treatment. Participants will be monitored for their response to these therapies over the course of the study.

Who should consider this trial

Good fit: Ideal candidates are adults aged 18-89 with a confirmed diagnosis of Crohn's disease and active disease as indicated by endoscopic findings.

Not a fit: Patients who are not currently experiencing active Crohn's disease or those who are not able to provide informed consent may not benefit from this study.

Why it matters

Potential benefit: If successful, this therapy could provide a novel treatment option for patients with Crohn's disease, potentially reducing inflammation and improving symptoms.

How similar studies have performed: Previous studies on fecal microbiota transplantation for other conditions have shown promising results, suggesting potential for success in this novel application.

Eligibility criteria

Show full inclusion / exclusion criteria
Inclusion Criteria:

* Able and willing to provide informed consent.
* 18-89 years of age.
* English speaking.
* Diagnosis of CD based on typical clinical and histologic features.
* Active disease on endoscopy:

  * SES-CD \>= 6
  * SES-CD \>= 4 for isolated ileal disease
* Current CD therapies are in the maintenance phase of dosing at the time of randomization.
* Any ongoing CD therapy (apart from steroid use) must be at stable doses for 4 weeks prior to randomization and remain stable over study course.
* Steroid use 20mg or less by 5 days prior to randomization.
* Steroid use stipulations:
* Prednisone must be tapered below 20mg after 7 days.
* Any use of budesonide over the study period is allowed although tapering is encouraged.
* Rescue medications: Steroid courses (up to 40mg for two weeks with a planned taper) are allowed at the discretion of the treating provider. Study drug therapy will be stopped on a case-by-case basis on discussion with the participant and treating provider.
* Women who are not post-menopausal (at least 12 months of non-therapy induced amenorrhea) or surgically sterile (e.g., absence of ovaries and/or uterus) must remain abstinent or use a highly effective form of birth control (e.g., oral contraception, transdermal patch, barrier, intrauterine device).

  o Periodic abstinence and early withdraw are not acceptable methods.
* Able to comply with study measures in the opinion of the investigator.

Exclusion Criteria:

* Extensive bowel resection: i.e., subtotal colectomy or substantial removal of small bowel where short bowel syndrome could be a concern.
* Documented gastroparesis
* History of pylorus non-preserving gastric surgery, e.g., Roux-en-Y gastric bypass.
* Symptomatic stricture defined as a stricture that:

  * Cannot be traversed by the colonoscope,
  * Requires intervention to be traversed,
  * Is otherwise responsible for the predominant clinical picture, in the opinion of the investigator.
* Presence of ileostomy or colostomy.
* Entero-vesicular fistula (i.e., fistula from bowel to bladder).
* Suspicion of ischemic colitis, radiation colitis or microscopic colitis.
* Diagnosis of ulcerative colitis.
* Active or untreated infection.
* Adenomatous polyps that have not been removed.
* Use of antibiotics within 14-days of randomization.
* Current pregnancy.
* Current breastfeeding or planning to breastfeed over the study period.
* History of anaphylactic food allergies.
* End stage liver disease or cirrhosis.
* Anticipated need for antibiotics over the study period.
* Anticipated surgical procedure over the study period.
* An absolute neutrophil count \<500 cell/µL.
* Diagnosis of a primary immunodeficiency.
* Active malignancy requiring the use of chemotherapeutic agent (except for localized non-melanomatous skin cancers).
* Patients receiving active cytotoxic therapy for solid tumors and hematologic malignancies.
* Any solid organ transplant within 6 months of randomization.
* Use of chimeric antigen receptor T-cell therapy or hematopoietic cell transplant within the past 12 months
* Life expectancy \>=6 months.

Where this trial is running

Minneapolis, Minnesota and 1 other locations

Study contacts

How to participate

  1. Review the eligibility criteria above with your treating physician.
  2. Visit the official trial page on ClinicalTrials.gov for the most current contact information and recruitment status.
  3. Contact the listed study coordinator or principal investigator to request pre-screening. Pre-screening is free and never obligates you to enroll.
Conditions Crohn Disease
Last reviewed 2026-06-13 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.