Mapping Gut Bacteria to Understand Health

Micron-scale Spatial Metagenomic Mapping of Microbial Biogeography in the Gastrointestinal Tract

NIH-funded research Columbia University Health Sciences · NIH-11085956

This project aims to understand how different bacteria arrange themselves in your gut to help us learn more about gut health and infections like C. difficile.

Quick facts

Grant typeR01 grant
Study typeNIH-funded research
Funding institutionColumbia University Health Sciences NIH-funded
Lab location1 site (New York, United States)
Project IDNIH-11085956 on NIH RePORTER

What this research studies

Your gut is home to many bacteria, called the microbiome, which are vital for your health. When these bacteria get out of balance, it can lead to problems like C. difficile infections, which are serious and hard to treat. We want to map exactly where these bacteria live in the gut, down to a very tiny scale, to understand how they organize themselves. This knowledge could help us figure out why some treatments, like fecal transplants, work and how to make them better. By studying samples from both humans and mice, we hope to uncover the rules that govern a healthy gut microbiome.

Who could benefit from this research

Good fit: This foundational research does not directly involve patient participation, but future clinical applications could benefit individuals suffering from gut microbiome imbalances or infections like C. difficile.

Not a fit: Patients not experiencing gut microbiome imbalances or bacterial infections would not directly benefit from this specific research.

Why it matters

Potential benefit: If successful, this work could lead to new and more effective ways to treat gut infections and restore a healthy balance of bacteria in the digestive system.

How similar studies have performed: This project builds upon existing spatial metagenomics techniques while also developing new, higher-throughput approaches for whole-genome analysis.

Where this research is happening

New York, United States

Researchers

About this research

  1. This is an active NIH-funded research project — typically early-stage science, not a clinical trial accepting patient enrollment.
  2. Some NIH-funded labs run parallel clinical studies or seek volunteers for related work. To check, contact the principal investigator or institution listed above.
  3. For full project details, budget, and progress reports, visit the official NIH RePORTER page below.
Conditions Bacterial Infections
Last reviewed 2026-06-13 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.