How viral DNA in gut probiotics controls antimicrobial production

Prophage-mediated regulation of antimicrobial production

['FUNDING_R01'] · UNIVERSITY OF WISCONSIN-MADISON · NIH-11238510

This project looks at whether tiny viral sequences inside a common probiotic change how much of an antimicrobial called reuterin the bacteria make, which could affect gut health.

Quick facts

Phase['FUNDING_R01']
Study typeNih_funding
SexAll
SponsorUNIVERSITY OF WISCONSIN-MADISON (nih funded)
Locations1 site (MADISON, UNITED STATES)
Trial IDNIH-11238510 on ClinicalTrials.gov

What this research studies

Researchers will study Limosilactobacillus reuteri, a probiotic that makes the antimicrobial reuterin, to find how prophages (viral DNA inside bacterial genomes) alter metabolic pathways. In the lab they will map genetic switches such as the pdu operon and test how prophages change reuterin production in cultured bacteria. The team will also examine ecological effects in living gut models, using mammalian (preclinical) systems to see how phage-driven changes reshape microbial communities. The combined molecular and in vivo work aims to reveal whether prophage regulation helps or hinders probiotic function.

Who could benefit from this research

Good fit: People interested in microbiome research or willing to donate stool samples for microbiome studies, especially those with gut health concerns, would be the most relevant participants for related future work.

Not a fit: Patients seeking immediate clinical treatments or those with conditions unrelated to the gut microbiome are unlikely to benefit directly from this basic research.

Why it matters

Potential benefit: If successful, the work could help design or choose probiotics that better protect the gut by controlling antimicrobial production.

How similar studies have performed: While probiotics and the antimicrobial reuterin have been studied before, regulation of metabolite production by prophages is a relatively new area with limited prior human-focused studies.

Where this research is happening

MADISON, UNITED STATES

Researchers

About this research

  1. This is an active NIH-funded research project — typically early-stage science, not a clinical trial accepting patient enrollment.
  2. Some NIH-funded labs run parallel clinical studies or seek volunteers for related work. To check, contact the principal investigator or institution listed above.
  3. For full project details, budget, and progress reports, visit the official NIH RePORTER page below.

View on NIH RePORTER →

Last reviewed 2026-05-15 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.