How gut microbes, probiotics and food molecules can block harmful gut bacteria

Microbiota, Probiotic and Dietary Metabolite Control of Enteric Pathogen Virulence

['FUNDING_R01'] · SCRIPPS RESEARCH INSTITUTE, THE · NIH-11224047

This project looks at whether natural molecules made by gut bacteria, probiotics, or food can stop harmful intestinal bacteria and help people with bacterial gut infections.

Quick facts

Phase['FUNDING_R01']
Study typeNih_funding
SexAll
SponsorSCRIPPS RESEARCH INSTITUTE, THE (nih funded)
Locations1 site (LA JOLLA, UNITED STATES)
Trial IDNIH-11224047 on ClinicalTrials.gov

What this research studies

If I were involved, researchers would look for specific molecules produced by the microbiome, probiotics, or diet that interfere with harmful gut bacteria. They will use chemical biology and proteomics to find which bacterial proteins those molecules bind to, then change bacterial genes to test how those interactions affect infection. The team will also test these effects in animal infection models to see if the molecules reduce bacterial virulence in living organisms. Together, these steps aim to turn basic findings into targets for new anti-infective approaches.

Who could benefit from this research

Good fit: People with recurrent or severe bacterial intestinal infections or those willing to donate stool or other samples for microbiome research would be the most relevant candidates.

Not a fit: People with viral stomach bugs, non-infectious bowel conditions (like IBS), or unrelated medical problems are unlikely to benefit directly from this work in the short term.

Why it matters

Potential benefit: Could lead to new non-antibiotic treatments or probiotic/diet-based strategies that reduce gut infections and lower the need for traditional antibiotics.

How similar studies have performed: Previous lab and animal studies suggest metabolites like short-chain fatty acids and bile acids can reduce bacterial virulence, but the precise targets and translation to human therapies remain largely experimental.

Where this research is happening

LA JOLLA, UNITED STATES

Researchers

About this research

  1. This is an active NIH-funded research project — typically early-stage science, not a clinical trial accepting patient enrollment.
  2. Some NIH-funded labs run parallel clinical studies or seek volunteers for related work. To check, contact the principal investigator or institution listed above.
  3. For full project details, budget, and progress reports, visit the official NIH RePORTER page below.

View on NIH RePORTER →

Last reviewed 2026-05-15 by the Find a Trial editorial team. Information on this page is for educational purposes and is not medical advice. Always consult qualified healthcare professionals about clinical trial participation.